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3D Imaging Offers Insights on Lung Involvement in COVID-19

By MedImaging International staff writers
Posted on 01 Sep 2020

A novel three-dimensional (3D) imaging technique enables high resolution representation of damaged lung tissue following severe Covid-19. More...

The new technique, developed at the University of Göttingen (Germany) and the Medical University of Hannover (MHH; Germany), is based on multi-scale phase contrast x-ray tomography, allows virtual histology and histopathology autopsy of the parenchymal architecture of unstained lung tissue from patients who succumbed to Covid-19. By combining parallel and cone beam geometry, autopsy samples with a maximum cross section of 4mm can be scanned and reconstructed at a resolution and image quality which allows for the segmentation of individual cells.

By using the zoom capability of the cone beam geometry, regions-of-interest are reconstructed with a minimum voxel size of 167 nm. In a proof-of-concept study, the researchers showed the capabilities of the new approach by visualizing diffuse alveolar damage (DAD), including prominent hyaline membrane formation, via mapping the 3D distribution and density of lymphocytes infiltrating the tissue, and by providing histograms of characteristic distances from tissue interior to the closest air compartment. The study was published on August 20, 2020, in eLife.

“Using zoom tomography, large areas of lung tissue embedded in wax can be scanned, enabling detailed examination to locate particularly interesting areas around inflammation, blood vessels, or bronchial tubes,” said lead author Professor Tim Salditt, PhD, of the University of Göttingen Institute of X-ray Physics. “Since X-rays penetrate deep into tissue, this enables scientists to understand the relation between the microscopic tissue structure and the larger functional architecture of an organ. This is important, for example, to visualize the tree of blood vessels down to the smallest capillaries.”

3D imaging via computerized tomography (CT) is not sufficient to detect tissue structure at cellular or sub-cellular resolution. The researchers therefore used phase contrast tomography, which exploits the different propagation velocities of X-rays in tissue to generate an intensity pattern. Special illumination optics and algorithms were then used to reconstruct sharp images from these patterns. This allowed examination of lung tissue at scalable size and resolution, yielding both larger overviews and close-up reconstructions.

Related Links:
University of Göttingen
Medical University of Hannover

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63 (973.93989562988): SELECT fid FROM jos_deeppockets WHERE id=294784266 AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE id=294784266 AND published='1' LIMIT 1

64 (495.91064453125): SELECT id,name,sponsor_text FROM jos_deeppockets dp left outer join jos_channel_sponsor cs on dp.id=cs.fid WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id=215 ORDER BY `ordering`

65 (92.029571533203): select jos_twitters.link from jos_twitters where cat=10

66 (160.93254089355): select jos_facebook.link from jos_facebook where cat=10

67 (46.968460083008): select jos_google_plus.link from jos_google_plus where cat=10

68 (42.915344238281): select jos_linkedin.link from jos_linkedin where cat=10

69 (66.995620727539): SELECT fid FROM jos_deeppockets WHERE id=294784266 AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE id=294784266 AND published='1' LIMIT 1

70 (51.021575927734): SELECT id,name,sponsor_text FROM jos_deeppockets dp left outer join jos_channel_sponsor cs on dp.id=cs.fid WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id=215 ORDER BY `ordering`

71 (348.09112548828): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

72 (267.98248291016): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

73 (65.088272094727): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

74 (85.830688476562): SELECT show_live FROM jos_com_show_setting LIMIT 1

75 (51.975250244141): SELECT show_live FROM jos_com_show_setting LIMIT 1

76 (42.915344238281): SELECT show_live FROM jos_com_show_setting LIMIT 1

77 (37.193298339844): SELECT show_live FROM jos_com_show_setting LIMIT 1

78 (46.014785766602): SELECT show_live FROM jos_com_show_setting LIMIT 1

79 (41.961669921875): SELECT show_live FROM jos_com_show_setting LIMIT 1

80 (44.107437133789): SELECT show_live FROM jos_com_show_setting LIMIT 1

81 (41.961669921875): SELECT show_live FROM jos_com_show_setting LIMIT 1

82 (43.869018554688): SELECT show_live FROM jos_com_show_setting LIMIT 1

83 (41.007995605469): SELECT show_live FROM jos_com_show_setting LIMIT 1

84 (49.114227294922): SELECT show_live FROM jos_com_show_setting LIMIT 1

85 (41.007995605469): SELECT show_live FROM jos_com_show_setting LIMIT 1

86 (56.982040405273): SELECT show_live FROM jos_com_show_setting LIMIT 1

87 (46.014785766602): SELECT show_live FROM jos_com_show_setting LIMIT 1

88 (86.069107055664): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

89 (46.968460083008): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

90 (51.975250244141): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

91 (91.075897216797): SELECT show_live FROM jos_com_show_setting LIMIT 1

92 (50.067901611328): SELECT show_live FROM jos_com_show_setting LIMIT 1

93 (51.975250244141): SELECT show_live FROM jos_com_show_setting LIMIT 1

94 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

95 (40.054321289062): SELECT show_live FROM jos_com_show_setting LIMIT 1

96 (41.007995605469): SELECT show_live FROM jos_com_show_setting LIMIT 1

97 (46.968460083008): SELECT show_live FROM jos_com_show_setting LIMIT 1

98 (40.054321289062): SELECT show_live FROM jos_com_show_setting LIMIT 1

99 (34.093856811523): SELECT show_live FROM jos_com_show_setting LIMIT 1

100 (30.994415283203): SELECT show_live FROM jos_com_show_setting LIMIT 1

101 (28.848648071289): SELECT show_live FROM jos_com_show_setting LIMIT 1

102 (30.040740966797): SELECT show_live FROM jos_com_show_setting LIMIT 1

103 (!!!!! 2024.1737365723): SELECT show_live FROM jos_com_show_setting LIMIT 1

104 (84.161758422852): SELECT show_live FROM jos_com_show_setting LIMIT 1

105 (98.943710327148): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

106 (51.021575927734): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

107 (72.002410888672): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294784266 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

108 (54.836273193359): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294784266 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

109 (118.01719665527): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

110 (77.962875366211): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

111 (76.055526733398): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294784266 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

112 (581.97975158691): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294784266 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

113 (597.95379638672): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

114 (329.01763916016): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

115 (99.897384643555): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

116 (68.902969360352): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

117 (114.20249938965): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

118 (61.988830566406): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

119 (170.94612121582): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

120 (57.93571472168): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

121 (83.92333984375): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

122 (44.822692871094): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

123 (200.03318786621): SELECT * FROM trending_articles WHERE `journal_id` = 10 AND `timestamp` <= NOW() + INTERVAL 7 DAY ORDER BY `order`

124 (!!!!! 23216.009140015): SELECT * FROM jos_deeppockets WHERE jos_deeppockets.cat = 10 AND jos_deeppockets.type = 'deeppockets_item' AND jos_deeppockets.published = 1 AND jos_deeppockets.created + INTERVAL 14 DAY >= NOW() ORDER BY jos_deeppockets.hits DESC LIMIT 7

125 (571.96617126465): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294784266 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294784266 AND type='deeppockets_item' AND published='1' LIMIT 1

126 (!!!!! 10581.970214844): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

127 (94.890594482422): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

128 (73.909759521484): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294803337 LIMIT 1

129 (43.153762817383): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294803337 LIMIT 1

130 (66.995620727539): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294803276 LIMIT 1

131 (41.007995605469): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294803276 LIMIT 1

132 (290.1554107666): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets_archive AS dp WHERE dp.id = 294803276 LIMIT 1

133 (142.09747314453): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets_archive AS dp WHERE dp.id = 294803276 LIMIT 1

134 (44.107437133789): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294802958 LIMIT 1

135 (36.001205444336): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294802958 LIMIT 1

136 (541.92543029785): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

137 (358.10470581055): SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

138 (217.91458129883): SELECT name FROM jos_deeppockets WHERE id=215

139 (49.114227294922): SELECT name FROM jos_deeppockets WHERE id=215

140 (801.08642578125): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))215((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

141 (668.04885864258): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))215((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

142 (265.12145996094): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

143 (122.0703125): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

144 (!!!!! 15801.906585693): TRUNCATE TABLE jos_trademed_module

145 (164.03198242188): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294784266 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

146 (99.897384643555): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294784266 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

147 (542.16384887695): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

148 (154.97207641602): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

149 (430.10711669922): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

150 (75.101852416992): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

151 (!!!!! 1369.9531555176): SELECT jos_item.* FROM jos_item INNER JOIN jos_number ON jos_item.numberID=jos_number.id WHERE 1=1 AND (jos_item.imgMini<>'') AND jos_item.type='L' AND jos_item.numberID= ( SELECT jos_number.id FROM jos_number WHERE jos_number.journalID IN (10) and jos_number.id in (select distinct jos_number.id from jos_number join jos_item on jos_item.numberid=jos_number.id where jos_item.type='P') ORDER BY (CONVERT(SUBSTRING(issue,1,2),SIGNED) + (CONVERT(SUBSTRING(issue,3,2),SIGNED)*100)) DESC LIMIT 0,1 ) ORDER BY RAND() DESC LIMIT 6

152 (72.002410888672): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

153 (52.928924560547): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

154 (69.141387939453): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294784266 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294784266 AND type='deeppockets_item' AND published='1' LIMIT 1

155 (637.05444335938): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=215 or channel_id is null)

156 (53.167343139648): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=215 or channel_id is null)

157 (47.922134399414): SELECT livesite FROM jos_dp_categories WHERE id=10 AND published='1' LIMIT 1

158 (109.91096496582): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

159 (78.916549682617): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294784266 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294784266 AND published='1' LIMIT 1

160 (83.208084106445): select jos_twitters.link from jos_twitters where cat=10

161 (50.067901611328): select jos_facebook.link from jos_facebook where cat=10

162 (50.783157348633): select jos_google_plus.link from jos_google_plus where cat=10

163 (47.922134399414): select jos_linkedin.link from jos_linkedin where cat=10

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