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Researchers Publish Chest X-Ray Dataset to Train AI Models

By MedImaging International staff writers
Posted on 20 Feb 2019

Image: The CheXpert dataset of chest X-rays is designed for automated chest X-ray interpretation (Photo courtesy of Stanford University School of Medicine).

Researchers from the Stanford University School of Medicine (Stanford, CA, USA) have published CheXpert, a large dataset of chest X-rays and competition for automated chest X-ray interpretation, which features uncertainty labels and radiologist-labeled reference standard evaluation sets. Automated chest radiograph interpretation at the level of practicing radiologists could provide substantial benefit in many medical settings, from improved workflow prioritization and clinical decision support to large-scale screening and global population health initiatives.

CheXpert consists of 224,316 chest radiographs of 65,240 patients collected from Stanford Hospital that were performed between October 2002 and July 2017 in both inpatient and outpatient centers, along with their associated radiology reports. The dataset was co-released with MIMIC-CXR, a large dataset of 371,920 chest X-rays associated with 227,943 imaging studies sourced from the Beth Israel Deaconess Medical Center between 2011-2016.

One of the main obstacles in the development of chest radiograph interpretation models has been the lack of datasets with strong radiologist-annotated groundtruth and expert scores against which researchers can compare their models. CheXpert is expected to address that gap, making it easy to track the progress of models over time on a clinically important task.

The researchers have also developed and open-sourced the CheXpert labeler, an automated rule-based labeler to extract observations from the free text radiology reports to be used as structured labels for the images. This is expected to help other institutions extract structured labels from their reports and release other large repositories of data that will allow for cross-institutional testing of medical imaging models. The dataset is expected to help in the development and validation of chest radiograph interpretation models towards improving healthcare access and delivery worldwide.

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Stanford University School of Medicine

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72 (38.862228393555): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

73 (58.889389038086): SELECT show_live FROM jos_com_show_setting LIMIT 1

74 (42.200088500977): SELECT show_live FROM jos_com_show_setting LIMIT 1

75 (31.948089599609): SELECT show_live FROM jos_com_show_setting LIMIT 1

76 (27.894973754883): SELECT show_live FROM jos_com_show_setting LIMIT 1

77 (27.179718017578): SELECT show_live FROM jos_com_show_setting LIMIT 1

78 (28.133392333984): SELECT show_live FROM jos_com_show_setting LIMIT 1

79 (26.941299438477): SELECT show_live FROM jos_com_show_setting LIMIT 1

80 (28.133392333984): SELECT show_live FROM jos_com_show_setting LIMIT 1

81 (26.941299438477): SELECT show_live FROM jos_com_show_setting LIMIT 1

82 (27.894973754883): SELECT show_live FROM jos_com_show_setting LIMIT 1

83 (26.941299438477): SELECT show_live FROM jos_com_show_setting LIMIT 1

84 (28.133392333984): SELECT show_live FROM jos_com_show_setting LIMIT 1

85 (27.179718017578): SELECT show_live FROM jos_com_show_setting LIMIT 1

86 (26.941299438477): SELECT show_live FROM jos_com_show_setting LIMIT 1

87 (45.061111450195): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294776977 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

88 (30.040740966797): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294776977 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

89 (33.140182495117): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

90 (96.08268737793): SELECT show_live FROM jos_com_show_setting LIMIT 1

91 (30.040740966797): SELECT show_live FROM jos_com_show_setting LIMIT 1

92 (28.133392333984): SELECT show_live FROM jos_com_show_setting LIMIT 1

93 (27.894973754883): SELECT show_live FROM jos_com_show_setting LIMIT 1

94 (26.941299438477): SELECT show_live FROM jos_com_show_setting LIMIT 1

95 (246.04797363281): SELECT show_live FROM jos_com_show_setting LIMIT 1

96 (37.908554077148): SELECT show_live FROM jos_com_show_setting LIMIT 1

97 (28.133392333984): SELECT show_live FROM jos_com_show_setting LIMIT 1

98 (27.179718017578): SELECT show_live FROM jos_com_show_setting LIMIT 1

99 (28.133392333984): SELECT show_live FROM jos_com_show_setting LIMIT 1

100 (27.179718017578): SELECT show_live FROM jos_com_show_setting LIMIT 1

101 (!!!!! 3751.9931793213): SELECT show_live FROM jos_com_show_setting LIMIT 1

102 (87.976455688477): SELECT show_live FROM jos_com_show_setting LIMIT 1

103 (29.087066650391): SELECT show_live FROM jos_com_show_setting LIMIT 1

104 (412.94097900391): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

105 (71.048736572266): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

106 (55.074691772461): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294776977 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

107 (524.04403686523): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294776977 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

108 (98.943710327148): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

109 (51.021575927734): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

110 (57.93571472168): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294776977 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

111 (472.06878662109): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294776977 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

112 (809.90791320801): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

113 (406.02684020996): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

114 (491.14227294922): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

115 (122.0703125): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

116 (795.12596130371): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

117 (51.975250244141): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

118 (56.982040405273): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

119 (40.054321289062): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

120 (!!!!! 7789.134979248): SELECT * FROM trending_articles WHERE `journal_id` = 10 AND `timestamp` <= NOW() + INTERVAL 7 DAY ORDER BY `order`

121 (!!!!! 51301.002502441): SELECT * FROM jos_deeppockets WHERE jos_deeppockets.cat = 10 AND jos_deeppockets.type = 'deeppockets_item' AND jos_deeppockets.published = 1 AND jos_deeppockets.created + INTERVAL 14 DAY >= NOW() ORDER BY jos_deeppockets.hits DESC LIMIT 7

122 (473.0224609375): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

123 (211.95411682129): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

124 (!!!!! 1046.1807250977): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294776977 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294776977 AND type='deeppockets_item' AND published='1' LIMIT 1

125 (!!!!! 1349682.0926666): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

126 (!!!!! 776735.06736755): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

127 (104.18891906738): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

128 (322.10350036621): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

129 (67.949295043945): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

130 (92.983245849609): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

131 (212.9077911377): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

132 (176.19132995605): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

133 (936.98501586914): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

134 (!!!!! 2797.8420257568): SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

135 (368.83354187012): SELECT name FROM jos_deeppockets WHERE id=217

136 (53.167343139648): SELECT name FROM jos_deeppockets WHERE id=217

137 (!!!!! 1671.7910766602): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))217((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

138 (825.88195800781): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))217((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

139 (!!!!! 2637.8631591797): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

140 (!!!!! 1835.823059082): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

141 (!!!!! 26034.832000732): TRUNCATE TABLE jos_trademed_module

142 (!!!!! 8436.918258667): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294776977 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

143 (881.91032409668): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294776977 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

144 (!!!!! 3557.2052001953): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

145 (85.115432739258): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

146 (!!!!! 1074.0756988525): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

147 (76.055526733398): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

148 (!!!!! 3586.0538482666): SELECT jos_item.* FROM jos_item INNER JOIN jos_number ON jos_item.numberID=jos_number.id WHERE 1=1 AND (jos_item.imgMini<>'') AND jos_item.type='L' AND jos_item.numberID= ( SELECT jos_number.id FROM jos_number WHERE jos_number.journalID IN (10) and jos_number.id in (select distinct jos_number.id from jos_number join jos_item on jos_item.numberid=jos_number.id where jos_item.type='P') ORDER BY (CONVERT(SUBSTRING(issue,1,2),SIGNED) + (CONVERT(SUBSTRING(issue,3,2),SIGNED)*100)) DESC LIMIT 0,1 ) ORDER BY RAND() DESC LIMIT 6

149 (896.93069458008): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

150 (597.00012207031): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

151 (!!!!! 2079.963684082): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294776977 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294776977 AND type='deeppockets_item' AND published='1' LIMIT 1

152 (370.97930908203): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=217 or channel_id is null)

153 (46.968460083008): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=217 or channel_id is null)

154 (858.06846618652): SELECT livesite FROM jos_dp_categories WHERE id=10 AND published='1' LIMIT 1

155 (258.20732116699): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

156 (308.99047851562): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294776977 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294776977 AND published='1' LIMIT 1

157 (958.91952514648): select jos_twitters.link from jos_twitters where cat=10

158 (334.9781036377): select jos_facebook.link from jos_facebook where cat=10

159 (145.91217041016): select jos_google_plus.link from jos_google_plus where cat=10

160 (337.12387084961): select jos_linkedin.link from jos_linkedin where cat=10

161 (!!!!! 1304.8648834229): update jos_bannersmanager_banner set impmade=impmade+1 where id in(14615,14202,14203)

162 (!!!!! 2805.9482574463): insert into jos_banners_delta values (14615,'2025-05-02 09:43:48','3.145.15.7','view'),(14202,'2025-05-02 09:43:48','3.145.15.7','view'),(14203,'2025-05-02 09:43:48','3.145.15.7','view')

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