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Database with Physician Input and Innovative Eye-Tracking Techniques Devised

By MedImaging International staff writers
Posted on 25 Aug 2010

Digital archives of biomedical images could soon put vital data at physicians' fingertips within seconds, demonstrating how computers can improve the manner in which medicine is practiced.

The current reality, however, is not quite there yet, with databases virtually overwhelmed by the explosion of medical imaging. Rochester Institute of Technology (NY, USA) professor Anne Haake recently won grants from the U.S. National Science Foundation (NSF; Arlington, VA, USA) and the U.S. National Institutes of Health (Bethesda, MD, USA) to address this problem. Prof. Haake foresees an image database built on input from the intended end-users and designed from the beginning with flexible user interfaces. She and her interdisciplinary team will develop a prototype using input from dermatologists to refine the search process for images of various skin conditions.

"We need to involve users from the very beginning,” said Prof. Haake, professor of information sciences and technologies at the B. Thomas Golisano College of Computing and Information Sciences. "This is especially true in the biomedical area where there is so much domain knowledge that it will be specific to each particular specialty.”

Prof. Haake understands the genuine need to make biomedical images useful. She began her career as a developmental biologist before pursuing computing and biomedical informatics. This project combines her two strengths and was inspired by research she conducted while on sabbatical at the NIH National Library of Medicine.

Dr. Cara Calvelli, a dermatologist and a professor in the physician assistant (PA) program in RIT's College of Science, has recruited dermatologists, residents, and PA students for the project. She is also helping to describe accurately the sample images, some of which come from her own collection. "The best way to learn is to see patients again and again with various disorders,” Dr. Calvelli stated. "When you can't get the patients themselves, getting good pictures, and learning how to describe them is second best.”

Funding Prof. Haake won from the NSF will support visual perception research using eye tracking and the design of a content-based image retrieval system accessible through touch, gaze, voice, and gesture; the NIH portion of the project will be used to fuse image understanding and medical knowledge.

Bridging the "semantic gap” is the challenge facing researchers working in content-based image retrieval, according to Prof. Haake. Search functions can go awry when computer engineered algorithms trip on nuances and fail to differentiate between disparate objects, such as a ship and a whale. Constructing a system based on end-user knowledge can prevent semantic problems from occurring.

Pengcheng Shi, director for graduate studies and research in the Golisano College, is providing his expertise in image understanding. "For many years computing/technical people have said we can write algorithms such that it will work,” he noted. "But people start to realize that machines are not all that powerful. At the end of the day we need to put the human back into it. What are the physicians looking at and how are they looking at it in order to make their decisions?”

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65 (41.007995605469): select jos_facebook.link from jos_facebook where cat=10

66 (38.862228393555): select jos_google_plus.link from jos_google_plus where cat=10

67 (36.954879760742): select jos_linkedin.link from jos_linkedin where cat=10

68 (125.88500976562): SELECT fid FROM jos_deeppockets WHERE id=294730837 AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE id=294730837 AND published='1' LIMIT 1

69 (104.18891906738): SELECT id,name,sponsor_text FROM jos_deeppockets dp left outer join jos_channel_sponsor cs on dp.id=cs.fid WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id=216 ORDER BY `ordering`

70 (452.04162597656): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

71 (357.15103149414): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

72 (62.942504882812): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

73 (279.90341186523): SELECT show_live FROM jos_com_show_setting LIMIT 1

74 (694.99015808105): SELECT show_live FROM jos_com_show_setting LIMIT 1

75 (432.01446533203): SELECT show_live FROM jos_com_show_setting LIMIT 1

76 (384.09233093262): SELECT show_live FROM jos_com_show_setting LIMIT 1

77 (234.12704467773): SELECT show_live FROM jos_com_show_setting LIMIT 1

78 (259.1609954834): SELECT show_live FROM jos_com_show_setting LIMIT 1

79 (504.0168762207): SELECT show_live FROM jos_com_show_setting LIMIT 1

80 (!!!!! 4762.1726989746): SELECT show_live FROM jos_com_show_setting LIMIT 1

81 (93.936920166016): SELECT show_live FROM jos_com_show_setting LIMIT 1

82 (41.961669921875): SELECT show_live FROM jos_com_show_setting LIMIT 1

83 (34.809112548828): SELECT show_live FROM jos_com_show_setting LIMIT 1

84 (35.04753112793): SELECT show_live FROM jos_com_show_setting LIMIT 1

85 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

86 (33.855438232422): SELECT show_live FROM jos_com_show_setting LIMIT 1

87 (82.969665527344): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

88 (39.100646972656): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

89 (41.007995605469): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

90 (106.0962677002): SELECT show_live FROM jos_com_show_setting LIMIT 1

91 (47.922134399414): SELECT show_live FROM jos_com_show_setting LIMIT 1

92 (42.915344238281): SELECT show_live FROM jos_com_show_setting LIMIT 1

93 (34.809112548828): SELECT show_live FROM jos_com_show_setting LIMIT 1

94 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

95 (34.809112548828): SELECT show_live FROM jos_com_show_setting LIMIT 1

96 (101.80473327637): SELECT show_live FROM jos_com_show_setting LIMIT 1

97 (41.961669921875): SELECT show_live FROM jos_com_show_setting LIMIT 1

98 (43.153762817383): SELECT show_live FROM jos_com_show_setting LIMIT 1

99 (39.815902709961): SELECT show_live FROM jos_com_show_setting LIMIT 1

100 (57.93571472168): SELECT show_live FROM jos_com_show_setting LIMIT 1

101 (37.908554077148): SELECT show_live FROM jos_com_show_setting LIMIT 1

102 (38.14697265625): SELECT show_live FROM jos_com_show_setting LIMIT 1

103 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

104 (110.86463928223): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

105 (68.187713623047): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

106 (127.07710266113): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294730837 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

107 (81.062316894531): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294730837 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

108 (!!!!! 1246.9291687012): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

109 (128.98445129395): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

110 (246.04797363281): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294730837 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

111 (572.20458984375): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294730837 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

112 (784.87396240234): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

113 (541.92543029785): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

114 (174.99923706055): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

115 (70.095062255859): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

116 (91.075897216797): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

117 (97.990036010742): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

118 (118.97087097168): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

119 (62.942504882812): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

120 (380.9928894043): SELECT * FROM trending_articles WHERE `journal_id` = 10 AND `timestamp` <= NOW() + INTERVAL 7 DAY ORDER BY `order`

121 (!!!!! 49568.176269531): SELECT * FROM jos_deeppockets WHERE jos_deeppockets.cat = 10 AND jos_deeppockets.type = 'deeppockets_item' AND jos_deeppockets.published = 1 AND jos_deeppockets.created + INTERVAL 14 DAY >= NOW() ORDER BY jos_deeppockets.hits DESC LIMIT 7

122 (150.91896057129): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

123 (67.949295043945): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

124 (582.93342590332): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294730837 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294730837 AND type='deeppockets_item' AND published='1' LIMIT 1

125 (!!!!! 555464.02931213): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

126 (91.075897216797): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

127 (838.04130554199): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

128 (48.87580871582): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

129 (!!!!! 4294.1570281982): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

130 (262.97569274902): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

131 (!!!!! 1143.9323425293): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

132 (195.98007202148): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

133 (!!!!! 1227.1404266357): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

134 (519.99092102051): SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

135 (298.02322387695): SELECT name FROM jos_deeppockets WHERE id=216

136 (72.956085205078): SELECT name FROM jos_deeppockets WHERE id=216

137 (813.96102905273): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))216((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

138 (648.02169799805): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))216((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

139 (105.85784912109): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

140 (63.896179199219): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

141 (!!!!! 23893.117904663): TRUNCATE TABLE jos_trademed_module

142 (!!!!! 9415.1496887207): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294730837 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

143 (!!!!! 1201.868057251): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294730837 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

144 (!!!!! 1092.9107666016): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

145 (102.99682617188): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

146 (734.09080505371): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

147 (82.969665527344): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

148 (!!!!! 9521.9612121582): SELECT jos_item.* FROM jos_item INNER JOIN jos_number ON jos_item.numberID=jos_number.id WHERE 1=1 AND (jos_item.imgMini<>'') AND jos_item.type='L' AND jos_item.numberID= ( SELECT jos_number.id FROM jos_number WHERE jos_number.journalID IN (10) and jos_number.id in (select distinct jos_number.id from jos_number join jos_item on jos_item.numberid=jos_number.id where jos_item.type='P') ORDER BY (CONVERT(SUBSTRING(issue,1,2),SIGNED) + (CONVERT(SUBSTRING(issue,3,2),SIGNED)*100)) DESC LIMIT 0,1 ) ORDER BY RAND() DESC LIMIT 6

149 (!!!!! 5560.1596832275): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

150 (131.13021850586): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

151 (70.810317993164): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294730837 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294730837 AND type='deeppockets_item' AND published='1' LIMIT 1

152 (36.954879760742): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=216 or channel_id is null)

153 (30.994415283203): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=216 or channel_id is null)

154 (33.855438232422): SELECT livesite FROM jos_dp_categories WHERE id=10 AND published='1' LIMIT 1

155 (87.02278137207): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

156 (55.789947509766): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294730837 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294730837 AND published='1' LIMIT 1

157 (663.04206848145): select jos_twitters.link from jos_twitters where cat=10

158 (302.07633972168): select jos_facebook.link from jos_facebook where cat=10

159 (49.114227294922): select jos_google_plus.link from jos_google_plus where cat=10

160 (43.153762817383): select jos_linkedin.link from jos_linkedin where cat=10

161 (!!!!! 1208.0669403076): update jos_bannersmanager_banner set impmade=impmade+1 where id in(14615,14202,14203)

162 (!!!!! 4777.193069458): insert into jos_banners_delta values (14615,'2025-06-20 06:23:05','216.73.216.120','view'),(14202,'2025-06-20 06:23:05','216.73.216.120','view'),(14203,'2025-06-20 06:23:05','216.73.216.120','view')

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