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Software Designed to Automatically Outline Bones in X-Rays

By MedImaging International staff writers
Posted on 25 Nov 2014

Research into such as arthritis and other disorders will soon get a helping hand from new software that automatically outlines bones, saving thousands of hours of manual work.

There is a shortage of radiographers in the United Kingdom and because of an increasing requirement for researchers to work with large databases of radiograph images, the software, which is being funded by the UK Engineering and Physical Sciences Research Council, is being designed to automatically detect the shapes of bones in the images, instead of relying on individual researchers.

The system can already identify hips; however, researchers from the University of Manchester’s (UK) Institute of Population Health will now modify it to map out knees and hands and to be able to learn to identify other bones and structures within the body. The funding will allow further development to ensure the system is accurate enough that it can be used in hospitals to help provide faster diagnosis of problems in patients.

Tim Cootes, a professor of computer vision, said, “Mapping the outlines of bones from radiographs is hard work that takes time and skill. When researchers into conditions like arthritis are working with hundreds of images, it’s a very inefficient way of obtaining data. The idea of this software is to take the routine tasks out of human hands, so scientists can focus on drawing conclusions and developing treatments.”

The funding of GBP 300,000 lasts for three years and builds on earlier research that helped to develop the software, called Bonefinder, to identify problems and find the outlines of hips. This free software has been implemented by a number of research groups, including some based in Oxford and the US state of California.

Prof. Cootes added, “We have a growing problem with arthritis which affects more than 30% of over 65s and costs around GBP 30 billion to the UK economy yearly. “Ultimately we want to get this technology into hospitals where it can save time and resources for the benefit of patients.”

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68 (409.84153747559): select jos_twitters.link from jos_twitters where cat=10

69 (62.942504882812): select jos_facebook.link from jos_facebook where cat=10

70 (42.915344238281): select jos_google_plus.link from jos_google_plus where cat=10

71 (43.153762817383): select jos_linkedin.link from jos_linkedin where cat=10

72 (64.849853515625): SELECT fid FROM jos_deeppockets WHERE id=294755872 AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE id=294755872 AND published='1' LIMIT 1

73 (43.869018554688): SELECT id,name,sponsor_text FROM jos_deeppockets dp left outer join jos_channel_sponsor cs on dp.id=cs.fid WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id=216 ORDER BY `ordering`

74 (663.04206848145): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

75 (350.9521484375): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

76 (51.021575927734): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

77 (78.916549682617): SELECT show_live FROM jos_com_show_setting LIMIT 1

78 (41.961669921875): SELECT show_live FROM jos_com_show_setting LIMIT 1

79 (35.04753112793): SELECT show_live FROM jos_com_show_setting LIMIT 1

80 (32.901763916016): SELECT show_live FROM jos_com_show_setting LIMIT 1

81 (33.855438232422): SELECT show_live FROM jos_com_show_setting LIMIT 1

82 (33.140182495117): SELECT show_live FROM jos_com_show_setting LIMIT 1

83 (39.100646972656): SELECT show_live FROM jos_com_show_setting LIMIT 1

84 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

85 (36.001205444336): SELECT show_live FROM jos_com_show_setting LIMIT 1

86 (32.901763916016): SELECT show_live FROM jos_com_show_setting LIMIT 1

87 (31.948089599609): SELECT show_live FROM jos_com_show_setting LIMIT 1

88 (32.901763916016): SELECT show_live FROM jos_com_show_setting LIMIT 1

89 (32.901763916016): SELECT show_live FROM jos_com_show_setting LIMIT 1

90 (32.901763916016): SELECT show_live FROM jos_com_show_setting LIMIT 1

91 (89.168548583984): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

92 (42.915344238281): SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

93 (47.922134399414): SELECT id,name,title FROM jos_deeppockets WHERE cat=10 AND TYPE='file_folder' AND published=1 AND id != 294743300 AND id != 294743301 AND id != 294743302 AND id != 294743303 AND id != 294743304 AND id != 294743305 AND id != 294743306 AND id != 294743307 AND id != 294743308 AND id != 294743309 AND id != 294743310 AND metakey != 'aacc' ORDER BY `ordering`

94 (57.93571472168): SELECT show_live FROM jos_com_show_setting LIMIT 1

95 (35.04753112793): SELECT show_live FROM jos_com_show_setting LIMIT 1

96 (31.948089599609): SELECT show_live FROM jos_com_show_setting LIMIT 1

97 (31.948089599609): SELECT show_live FROM jos_com_show_setting LIMIT 1

98 (33.140182495117): SELECT show_live FROM jos_com_show_setting LIMIT 1

99 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

100 (46.014785766602): SELECT show_live FROM jos_com_show_setting LIMIT 1

101 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

102 (38.14697265625): SELECT show_live FROM jos_com_show_setting LIMIT 1

103 (37.908554077148): SELECT show_live FROM jos_com_show_setting LIMIT 1

104 (39.100646972656): SELECT show_live FROM jos_com_show_setting LIMIT 1

105 (36.954879760742): SELECT show_live FROM jos_com_show_setting LIMIT 1

106 (46.014785766602): SELECT show_live FROM jos_com_show_setting LIMIT 1

107 (39.100646972656): SELECT show_live FROM jos_com_show_setting LIMIT 1

108 (119.92454528809): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

109 (68.187713623047): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

110 (109.19570922852): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294755872 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

111 (75.817108154297): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294755872 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

112 (99.18212890625): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

113 (54.121017456055): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

114 (58.889389038086): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294755872 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

115 (629.18663024902): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.id=294755872 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

116 (679.01611328125): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

117 (566.00570678711): SELECT dp.name, dp.id, dp2.name as channel, ex.name as author_name, ex.specialization, ex.images FROM jos_deeppockets as dp LEFT JOIN jos_experts as ex ON ex.id = dp.author LEFT JOIN jos_deeppockets as dp2 ON dp2.id = dp.fid WHERE dp.author != 0 AND dp.cat = 10 AND dp.published = 1 AND ( (dp.fid = 294743300) OR (dp.fid = 294743301) OR (dp.fid = 294743302) OR (dp.fid = 294743303) OR (dp.fid = 294743304) OR (dp.fid = 294743305) OR (dp.fid = 294743306) OR (dp.fid = 294743307) OR (dp.fid = 294743308) OR (dp.fid = 294743309) OR (dp.fid = 294743310) ) ORDER BY RAND() LIMIT 1

118 (450.84953308105): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

119 (110.86463928223): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

120 (107.0499420166): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

121 (67.949295043945): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

122 (77.962875366211): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

123 (51.975250244141): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

124 (371.93298339844): SELECT * FROM trending_articles WHERE `journal_id` = 10 AND `timestamp` <= NOW() + INTERVAL 7 DAY ORDER BY `order`

125 (!!!!! 28364.896774292): SELECT * FROM jos_deeppockets WHERE jos_deeppockets.cat = 10 AND jos_deeppockets.type = 'deeppockets_item' AND jos_deeppockets.published = 1 AND jos_deeppockets.created + INTERVAL 14 DAY >= NOW() ORDER BY jos_deeppockets.hits DESC LIMIT 7

126 (181.91337585449): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

127 (82.969665527344): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

128 (691.17546081543): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294755872 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294755872 AND type='deeppockets_item' AND published='1' LIMIT 1

129 (!!!!! 901223.89793396): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

130 (145.19691467285): ( SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.video != '' AND dp.video_source != '' AND dp.cat = 10 AND dp.published = 1 AND dp.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) UNION ( SELECT dpa.id, dpa.name, dpa.title, dpa.video, dpa.video_source, dpa.created FROM jos_deeppockets_archive AS dpa WHERE dpa.video != '' AND dpa.video_source != '' AND dpa.cat = 10 AND dpa.published = 1 AND dpa.type != 'deeppockets_item_link' ORDER BY created DESC LIMIT 3 ) ORDER BY created DESC LIMIT 3

131 (492.09594726562): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

132 (66.995620727539): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800513 LIMIT 1

133 (381.9465637207): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

134 (51.975250244141): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800359 LIMIT 1

135 (378.84712219238): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

136 (51.975250244141): SELECT dp.id, dp.name, dp.title, dp.video, dp.video_source, dp.created FROM jos_deeppockets AS dp WHERE dp.id = 294800361 LIMIT 1

137 (619.88830566406): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

138 (360.96572875977): SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

139 (236.03439331055): SELECT name FROM jos_deeppockets WHERE id=216

140 (52.928924560547): SELECT name FROM jos_deeppockets WHERE id=216

141 (583.88710021973): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))216((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

142 (872.85041809082): SELECT *, DATE_FORMAT(publish_up,'%d %b %Y') AS date_publish_up, DATE_FORMAT(publish_down,'%d %b %Y') AS date_publish_down FROM jos_events WHERE state=1 AND publish_up > NOW() and extra_info REGEXP '((;)|(^))216((;)|($))' AND catid IN (0,110) ORDER BY publish_up ASC LIMIT 3

143 (83.208084106445): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

144 (52.928924560547): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

145 (!!!!! 16929.149627686): TRUNCATE TABLE jos_trademed_module

146 (144.95849609375): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294755872 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

147 (91.075897216797): SELECT dp.*, ch.title as channel, exp.name as author_name, exp.specialization as author_specialization, exp.images as author_photo FROM jos_deeppockets_archive as dp LEFT JOIN jos_experts as exp ON exp.id = dp.author LEFT JOIN jos_deeppockets as ch ON dp.fid = ch.id WHERE 1=1 AND dp.cat=10 AND dp.id=294755872 AND (dp.type='deeppockets_item' OR dp.type='deeppockets_item_link') AND dp.published='1' LIMIT 1

148 (571.01249694824): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

149 (76.055526733398): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND (type='deeppockets_item' OR type='deeppockets_item_link') AND published='1' LIMIT 1

150 (80.82389831543): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

151 (57.93571472168): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

152 (!!!!! 1735.9256744385): SELECT jos_item.* FROM jos_item INNER JOIN jos_number ON jos_item.numberID=jos_number.id WHERE 1=1 AND (jos_item.imgMini<>'') AND jos_item.type='L' AND jos_item.numberID= ( SELECT jos_number.id FROM jos_number WHERE jos_number.journalID IN (10) and jos_number.id in (select distinct jos_number.id from jos_number join jos_item on jos_item.numberid=jos_number.id where jos_item.type='P') ORDER BY (CONVERT(SUBSTRING(issue,1,2),SIGNED) + (CONVERT(SUBSTRING(issue,3,2),SIGNED)*100)) DESC LIMIT 0,1 ) ORDER BY RAND() DESC LIMIT 6

153 (128.98445129395): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

154 (73.909759521484): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

155 (82.015991210938): SELECT fid FROM jos_deeppockets WHERE cat=10 AND id=294755872 AND type='deeppockets_item' AND published='1' union SELECT fid FROM jos_deeppockets_archive WHERE cat=10 AND id=294755872 AND type='deeppockets_item' AND published='1' LIMIT 1

156 (53.882598876953): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=216 or channel_id is null)

157 (47.922134399414): select distinct links.* from jos_textlinks links join jos_textlinks_placement placement on links.id=placement.link_id where journal_id=(10) and (channel_id=216 or channel_id is null)

158 (66.995620727539): SELECT livesite FROM jos_dp_categories WHERE id=10 AND published='1' LIMIT 1

159 (!!!!! 1380.9204101562): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

160 (99.18212890625): SELECT * FROM jos_deeppockets WHERE 1=1 AND id=294755872 AND published='1' union SELECT * FROM jos_deeppockets_archive WHERE 1=1 AND id=294755872 AND published='1' LIMIT 1

161 (183.10546875): select jos_twitters.link from jos_twitters where cat=10

162 (46.014785766602): select jos_facebook.link from jos_facebook where cat=10

163 (37.908554077148): select jos_google_plus.link from jos_google_plus where cat=10

164 (34.093856811523): select jos_linkedin.link from jos_linkedin where cat=10

165 (391.00646972656): update jos_bannersmanager_banner set impmade=impmade+1 where id in(14615,14202,14203)

166 (!!!!! 3746.0327148438): insert into jos_banners_delta values (14615,'2025-05-02 12:40:04','3.137.178.51','view'),(14202,'2025-05-02 12:40:04','3.137.178.51','view'),(14203,'2025-05-02 12:40:04','3.137.178.51','view')

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